Add cache clearing command to launcher

NEW FEATURE:
- launcher.sh --clear-cache: Clear all stale cache and temp files
- Clears .sysref.beta and .sysref.beta.timestamp
- Clears temporary files in tmp/ directory
- Auto-rebuilds cache on next run

USAGE:
  bash launcher.sh --clear-cache

SOLVES:
- Users can now easily clear stale cache
- WordPress site listings will update
- Database/user listings will refresh
- No more ghost entries from previous runs

ADDED TO HELP:
- Updated --help output with --clear-cache option
- Usage examples included

.gitignore

@@ -5,9 +5,11 @@
 *.swo
 *~
 
-# Reference database (session data)
+# Reference database (session data) - Production and Dev
 .sysref
 .sysref.timestamp
+.sysref.beta
+.sysref.beta.timestamp
 
 # System-specific logs
 *.log
@@ -28,9 +30,15 @@
 .DS_Store
 Thumbs.db
 
-# Runtime directories
+# Runtime directories and cache
 /modules/security/temp/
 /modules/security/live-monitor-*/
+/config/
+/data/
+/logs/
+/tmp/
+/backups/
+/downloads/
 
 # Credentials and keys (NEVER commit these)
 *.key

.sysref.beta

@@ -1,35 +0,0 @@
-# System Reference Database
-# Generated: Thu Mar 19 08:28:56 PM EDT 2026
-# Format: Type|Field1|Field2|...
-
-[SYSTEM]
-SYS|CONTROL_PANEL|cpanel|11.134.0.10
-SYS|OS|almalinux|9.7
-SYS|WEB_SERVER|apache|2.4.66
-SYS|DATABASE|mariadb|10.6.25
-SYS|LOG_DIR|/var/log/apache2/domlogs|
-SYS|USER_HOME|/home|
-SYS|CPU_CORES|2|
-SYS|HOSTNAME|cloudvpstemplate.host.pickledperil.com|
-SYS|PHP_VERSION|8.0.30|
-SYS|PHP_VERSION|8.1.34|
-SYS|PHP_VERSION|8.2.30|
-
-[USERS]
-USER|pickledperil|pickledperil.com|1|1|134|/home/pickledperil
-
-[DATABASES]
-DB|pickledperil_wp_wt6lz|pickledperil
-unknown|pickledperil.com|0.78|12
-
-[DOMAINS]
-DOMAIN|pickledperil.com|pickledperil|/home/pickledperil/public_html|/etc/apache2/logs/domlogs/pickledperil.com|ea-php81|yes|primary|www.pickledperil.com|500|500|500_ERROR
-DOMAIN|www.pickledperil.com|pickledperil|/home/pickledperil/public_html|/etc/apache2/logs/domlogs/pickledperil.com|ea-php81|no|alias|pickledperil.com|500|500|alias_of_500_ERROR
-DOMAIN|67-227-141-132.cprapid.com|unknown||/var/log/apache2/domlogs/67-227-141-132.cprapid.com||unknown|local||timeout|timeout|TIMEOUT
-DOMAIN|cloudvpstemplate.host.pickledperil.com|unknown||/var/log/apache2/domlogs/cloudvpstemplate.host.pickledperil.com||unknown|local||200|200|200_OK
-
-[WORDPRESS]
-WP|pickledperil.com|pickledperil|/home/pickledperil/public_html|pickledperil_wp_wt6lz|pickledperil_wp_7vcwf|6.9.1|2|3
-
-[LOGS]
-

.sysref.beta.timestamp

@@ -1 +0,0 @@
-1773966543

data/suspicious-login-monitor/baseline.dat

@@ -1,8 +0,0 @@
-# Baseline data for suspicious login monitor
-# Last updated: Thu Feb  5 08:37:33 PM EST 2026
-BASELINE_SSH_KEY_COUNT=1
-BASELINE_USER_COUNT=3
-BASELINE_TYPICAL_LOGIN_HOURS="19"
-BASELINE_PASSWORD_CHANGES_PER_WEEK=0
-BASELINE_NEW_USERS_PER_WEEK=0
-BASELINE_LAST_UPDATE=1770341853

launcher.sh

@@ -780,13 +780,59 @@ main() {
             echo "═══════════════════════════════════════════════════════════════"
             return 0
             ;;
+        --clear-cache)
+            # Initialize directories first
+            init_directories || {
+                echo "ERROR: Failed to initialize directories"
+                return 1
+            }
+
+            # Clear all caches
+            local cache_cleared=0
+
+            # Production cache
+            if [ -f "$BASE_DIR/.sysref" ] || [ -f "$BASE_DIR/.sysref.timestamp" ]; then
+                rm -f "$BASE_DIR/.sysref" "$BASE_DIR/.sysref.timestamp" 2>/dev/null || true
+                echo "✓ Cleared production cache (.sysref)"
+                cache_cleared=1
+            fi
+
+            # Dev cache
+            if [ -f "$BASE_DIR/.sysref.beta" ] || [ -f "$BASE_DIR/.sysref.beta.timestamp" ]; then
+                rm -f "$BASE_DIR/.sysref.beta" "$BASE_DIR/.sysref.beta.timestamp" 2>/dev/null || true
+                echo "✓ Cleared dev cache (.sysref.beta)"
+                cache_cleared=1
+            fi
+
+            # Temp files
+            if [ -d "$BASE_DIR/tmp" ]; then
+                rm -rf "$BASE_DIR/tmp"/* 2>/dev/null || true
+                echo "✓ Cleared temporary files"
+                cache_cleared=1
+            fi
+
+            if [ $cache_cleared -eq 0 ]; then
+                echo "ℹ️  No cache files to clear"
+            else
+                echo ""
+                echo "Cache cleared successfully!"
+                echo "System will auto-detect and rebuild cache on next run."
+            fi
+            return 0
+            ;;
         --help|--usage|-h|-?)
             echo "Usage: launcher.sh [OPTIONS]"
             echo ""
             echo "Options:"
             echo "  --detect-only        Show system detection results and exit"
+            echo "  --clear-cache        Clear all cache and temporary files"
             echo "  --help               Show this help message"
             echo ""
+            echo "Examples:"
+            echo "  bash launcher.sh --detect-only      # Check what was detected"
+            echo "  bash launcher.sh --clear-cache      # Clear stale cache data"
+            echo "  bash launcher.sh                    # Normal interactive mode"
+            echo ""
             return 0
             ;;
     esac