cschantz eeffd30650 Add comprehensive progress tracking and reliability improvements to malware scanner
Implemented Option A: Level 1 + Level 2 improvements for better visibility,
reliability, and accuracy during malware scans.

NEW FEATURES - Progress Tracking:

1. Maldet Scanner:
   - Real-time percentage progress display
   - Live file count updates
   - Example: "Progress: 75% (9,450 files scanned)"
   - Timeout: 2 hours

2. ImunifyAV Scanner:
   - Live progress polling via on-demand list API
   - Updates file count every 3 seconds
   - Shows elapsed time and scan status
   - Example: "Files scanned: 1,234 | Elapsed: 5m 23s | Status: running"
   - Timeout: 2 hours per path

3. ClamAV Scanner:
   - Activity spinner with file name display
   - Shows last file being scanned
   - Stall detection (warns if no activity for 60s)
   - Example: "Scanning... ⠋ | Last file: index.php | Elapsed: 8m 15s"
   - Timeout: 2 hours

4. RKHunter Scanner:
   - Live test name display
   - Shows which check is currently running
   - Example: "→ Checking for suspicious files..."
   - Timeout: 30 minutes (fast scanner)

NEW FEATURES - Reliability:

5. Timeout Protection:
   - All scanners now have timeouts to prevent infinite hangs
   - Gracefully handles timeout with exit code 124
   - Logs timeout events for debugging

6. Result Validation:
   - Validates each scanner produced output
   - Checks ClamAV reached summary line (not interrupted)
   - Reports validation issues in summary
   - Example: "✓ Scan Validation: All scanners completed successfully"

7. Enhanced Error Handling:
   - Better exit code checking for each scanner
   - Distinguishes between failures, warnings, and timeouts
   - Improved error messages with context

HELPER FUNCTIONS ADDED:

- show_spinner(): Activity indicator for background processes
- format_time(): Human-readable time formatting (5m 23s, 2h 15m)

CHANGES BY SCANNER:

ImunifyAV (lines 816-907):
- Replaced synchronous wait with background + polling
- Added progress loop showing files/elapsed/status
- Added per-path timeout tracking
- Total file count across all paths

ClamAV (lines 920-1016):
- Replaced blocking call with background + spinner
- Added log file monitoring for current file
- Added stall detection (60s no activity)
- Shows filename (truncated to 40 chars)

Maldet (lines 927-1016):
- Added --progress flag parsing
- Real-time percentage display
- Parse format: "files: 1234 (45%)"
- Timeout and exit code handling

RKHunter (lines 1100-1149):
- Added live test name extraction
- Parse "Checking for..." and "Testing..." lines
- Shows current check (truncated to 60 chars)
- Faster timeout (30min vs 2hr)

Result Validation (lines 1300-1353):
- New validation section after all scans
- Checks log file existence and size
- ClamAV summary line verification
- Counts and reports issues

IMPACT:

Before:
- No progress visibility during long scans
- No way to know if scan is stalled or working
- No timeout protection (could hang forever)
- No validation of scan completion

After:
- Real-time progress for all scanners
- Live activity indicators (spinner, file names, percentages)
- Automatic timeout protection (prevents infinite hangs)
- Result validation catches incomplete scans
- Better user experience and confidence in results

Testing:
- Syntax validation: PASSED
- All scanners maintain existing functionality
- No breaking changes to scan logic
- Backwards compatible with existing scan results
2025-12-22 19:10:08 -05:00
2025-11-03 18:14:51 -05:00

Linux Server Management Toolkit

Comprehensive multi-panel server management suite supporting cPanel, InterWorx, Plesk, and standalone Apache with modular architecture and intelligent security features.

📦 Directory Structure

server-toolkit/
├── launcher.sh                          # Main menu system
├── README.md                            # This file
│
├── modules/                             # Modular scripts organized by category
│   │
│   ├── diagnostics/                     # 🔍 System Diagnostics
│   │   ├── system-health-check.sh      # Comprehensive health analysis
│   │   └── loadwatch-analyzer.sh       # Historical system health analysis
│   │
│   ├── security/                        # 🛡️ Security & Monitoring
│   │   ├── bot-analyzer.sh             # Full bot/threat analysis
│   │   ├── live-attack-monitor.sh      # Real-time attack monitoring dashboard
│   │   ├── ssh-attack-monitor.sh       # SSH brute force detection
│   │   ├── web-traffic-monitor.sh      # Web traffic monitoring
│   │   ├── firewall-activity-monitor.sh # CSF/iptables monitoring
│   │   ├── enable-cphulk.sh            # cPHulk enablement with CSF whitelist import
│   │   ├── ip-reputation-manager.sh    # Centralized IP reputation tracking
│   │   └── tail-*.sh                   # Various log monitoring scripts
│   │
│   ├── backup/                          # 💾 Backup & Recovery
│   │   ├── acronis-*.sh                # Acronis Cyber Protect (9 management scripts)
│   │   └── mysql-restore-to-sql.sh     # MySQL/MariaDB database restore & dump tool
│   │
│   ├── website/                         # 🌐 Website Diagnostics
│   │   ├── website-error-analyzer.sh   # Comprehensive error analysis
│   │   ├── 500-error-tracker.sh        # Fast 500 error tracking
│   │   └── wordpress/                  # WordPress tools
│   │
│   ├── performance/                     # 📊 Performance Analysis
│   │   ├── hardware-health-check.sh    # Hardware diagnostics
│   │   ├── mysql-query-analyzer.sh     # MySQL performance analysis
│   │   ├── network-bandwidth-analyzer.sh # Network analysis
│   │   ├── php-optimizer.sh            # PHP Configuration Optimizer (NEW!)
│   │   └── (other performance modules)
│   │
│   └── maintenance/                     # 🧹 System Maintenance
│       └── cleanup-toolkit-data.sh     # Clean temporary toolkit data
│
├── lib/                                 # Shared libraries
│   ├── common-functions.sh             # Reusable functions
│   ├── system-detect.sh                # System type detection
│   ├── user-manager.sh                 # User account management
│   ├── mysql-analyzer.sh               # MySQL utilities
│   ├── reference-db.sh                 # Cross-module intelligence sharing
│   ├── php-detector.sh                 # PHP configuration detection (NEW!)
│   ├── php-analyzer.sh                 # PHP performance analysis engine (NEW!)
│   └── php-config-manager.sh           # PHP config backup/restore/modification (NEW!)
│
├── config/                              # Configuration files
│   ├── settings.conf                   # Main configuration
│   ├── whitelist-ips.txt               # IP whitelist
│   └── whitelist-user-agents.txt       # User-Agent whitelist
│
└── tools/                               # Utility scripts
    ├── diagnostic-report.sh            # Generate system reports
    └── test-*.sh                       # Testing utilities

🚀 Quick Start

Installation & Running

One command - automatic cleanup:

curl -sL https://git.mull.lol/cschantz/Linux-Server-Management-Toolkit/archive/main.tar.gz | tar xz && source linux-server-management-toolkit/run.sh

When exiting (option 0), answer "yes" and cleanup happens automatically - no extra steps.

Or if already downloaded:

source /root/linux-server-management-toolkit/run.sh

Key Features

🛡️ Security & Monitoring

  • Bot & Traffic Analyzer: Full bot/threat analysis with pattern detection
  • Live Attack Monitor: Real-time SOC dashboard with threat classification
  • Specialized Monitors: SSH attacks, web traffic, firewall activity
  • IP Reputation Manager: Centralized cross-module IP intelligence with query/tracking
  • Malware Scanner: ImunifyAV, ClamAV, and Maldet integration
  • cPHulk Integration: Auto-imports CSF whitelists from all sources
  • Log Viewers: Live tail for Apache access/error, mail, and security logs
  • Optimized Status Checks: Uses cached domain status (no redundant HTTP requests)

💾 Backup & Recovery

  • Acronis Cyber Protect: Complete agent management (install, update, configure, monitor, troubleshoot)
  • MySQL Database Restore Tool: Advanced recovery from file-based backups with intelligent Force Recovery
    • Multi-control panel support (cPanel, InterWorx, Plesk, standalone)
    • Smart detection for selective restore scenarios
    • Safe single-database extraction from full backups
    • Clean SQL export for production import

🌐 Website Diagnostics

  • Error Analysis: Comprehensive website error detection and troubleshooting
  • 500 Error Tracking: Detailed analysis of application errors
  • Log Integration: Apache, PHP-FPM, cPanel error log analysis
  • Smart Recommendations: Context-aware suggestions for fixing issues

🔍 Performance & Diagnostics

  • System Health Check: Comprehensive hardware, services, and security posture analysis
  • Loadwatch Analyzer: Historical system health analysis (1h/6h/24h/7d/30d time ranges)
  • MySQL Query Analyzer: Slow query detection and optimization recommendations
  • Network & Bandwidth Analyzer: Traffic analysis and top consumers
  • Hardware Health Check: SMART, memory, CPU sensors
  • PHP Configuration Optimizer: Per-domain PHP-FPM tuning with auto-backup and zero downtime
  • Multi-Panel Support: cPanel, InterWorx, Plesk, standalone Apache

📊 Session Intelligence

  • Reference Database: Cross-module data sharing (.sysref)
  • No Historical Tracking: Session-based intelligence only
  • "Download, Run, Fix, Delete": Designed for one-time troubleshooting

🎯 Usage Examples

Quick System Health Check

bash launcher.sh
# Select: 1) System Health Check

Security Analysis & Monitoring

bash launcher.sh
# Select: 2) Security & Monitoring
# Options:
#   - Bot & Traffic Analyzer (full scan or 1-hour quick scan)
#   - Live Attack Monitor (unified threat intelligence)
#   - SSH/Web/Firewall attack monitors
#   - IP Reputation Manager
#   - Malware Scanner
#   - Enable cPHulk Protection

Website Diagnostics

bash launcher.sh
# Select: 3) Website Diagnostics
# Options:
#   - Website Error Analyzer (comprehensive error detection)
#   - Fast 500 Error Tracker (500 errors only)
#   - WordPress Tools (WP-Cron manager)

Performance Analysis

bash launcher.sh
# Select: 4) Performance Analysis
# Options:
#   - MySQL Query Analyzer (slow query detection)
#   - Network & Bandwidth Analyzer
#   - Hardware Health Check
#   - PHP Configuration Optimizer (per-domain tuning)
#   - Loadwatch Health Analyzer (1h/6h/24h/7d/30d analysis)

Backup & Recovery

bash launcher.sh
# Select: 5) Backup & Recovery
# Options:
#   - Acronis Management (complete backup interface)
#   - MySQL File Restore (convert DB files to SQL)

🔧 Configuration

Edit the configuration file:

nano /root/server-toolkit/config/settings.conf

🔒 Security Considerations

  • Run as root: Most modules require root access
  • Credentials stored safely: Git credentials in ~/.git-credentials (outside project)
  • No sensitive data in repo: .gitignore excludes keys, tokens, credentials
  • Test first: Try on non-production environments first

📊 Recent Updates (v2.1)

December 2025 Highlights

  • Launcher Cleanup: Removed 90+ phantom menu items, reduced from 1,576 to 574 lines (64% reduction)
  • Performance: Cached domain status checks save ~5 minutes on 50-domain servers
  • MySQL Restore Tool: Advanced database recovery with intelligent Force Recovery detection
  • Multi-Panel: Full support for cPanel, InterWorx, Plesk, standalone Apache

Current Feature Set

  • 41 Working Modules: Security (14), Website (3), Performance (5), Backup (11), Diagnostics (8)
  • Reference Database: 1-hour cached status for cross-module intelligence
  • Zero Hardcoded Paths: Automatic control panel detection and path abstraction

🙏 Credits

Built for comprehensive cPanel/Linux server management with a focus on security and intelligent automation.


Version: 2.1.0 Repository: https://git.mull.lol/cschantz/Linux-Server-Management-Toolkit

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