⚡ Linux Server Management Toolkit

Comprehensive multi-panel server management suite supporting cPanel, InterWorx, Plesk, and standalone Apache with modular architecture and intelligent security features.

📦 Directory Structure

server-toolkit/
├── launcher.sh                          # Main menu system
├── README.md                            # This file
│
├── modules/                             # Modular scripts organized by category
│   │
│   ├── diagnostics/                     # 🔍 System Diagnostics
│   │   ├── system-health-check.sh      # Comprehensive health analysis
│   │   └── loadwatch-analyzer.sh       # System health from loadwatch monitoring logs
│   │
│   ├── security/                        # 🛡️ Security & Threat Analysis
│   │   ├── bot-analyzer.sh             # Full bot/threat analysis
│   │   ├── live-attack-monitor.sh      # Real-time attack monitoring dashboard
│   │   ├── ssh-attack-monitor.sh       # SSH brute force detection
│   │   ├── web-traffic-monitor.sh      # Web traffic monitoring
│   │   ├── firewall-activity-monitor.sh # CSF/iptables monitoring
│   │   ├── enable-cphulk.sh            # cPHulk enablement with CSF whitelist import
│   │   ├── ip-reputation-manager.sh    # Centralized IP reputation tracking
│   │   └── tail-*.sh                   # Various log monitoring scripts
│   │
│   ├── backup/                          # 💾 Backup & Recovery
│   │   ├── acronis-backup-manager.sh   # Main backup management menu (Acronis Cyber Protect)
│   │   ├── acronis-install.sh          # Install Acronis agent
│   │   ├── acronis-update.sh           # Update Acronis agent
│   │   ├── acronis-uninstall.sh        # Uninstall Acronis agent
│   │   ├── acronis-register.sh         # Register agent with cloud
│   │   ├── acronis-configure.sh        # Configure agent settings
│   │   ├── acronis-agent-status.sh     # Comprehensive agent status check
│   │   ├── acronis-trigger-backup.sh   # Trigger manual backups with optimizations
│   │   ├── acronis-backup-status.sh    # Check backup job status
│   │   ├── acronis-list-backups.sh     # List all backups
│   │   ├── acronis-plan-manager.sh     # Manage protection plans
│   │   ├── acronis-schedule-viewer.sh  # View backup schedules
│   │   ├── acronis-restore.sh          # Restore from backup
│   │   ├── acronis-logs.sh             # View Acronis logs
│   │   ├── acronis-troubleshoot.sh     # Troubleshoot common issues
│   │   └── mysql-restore-to-sql.sh     # Advanced MySQL/MariaDB database restore & dump tool
│   │
│   ├── website/                         # 🌐 Website Diagnostics & Troubleshooting
│   │   ├── website-error-analyzer.sh   # Comprehensive website error analysis
│   │   └── 500-error-tracker.sh        # Track and analyze 500 errors
│   │
│   ├── diagnostics/                     # 🔍 System Diagnostics & Log Analysis
│   │   ├── system-health-check.sh      # Comprehensive health analysis
│   │   └── loadwatch-analyzer.sh       # System health monitoring from loadwatch logs
│   │
│   ├── performance/                     # 📊 Performance Analysis
│   │   ├── hardware-health-check.sh    # Hardware diagnostics
│   │   ├── mysql-query-analyzer.sh     # MySQL performance analysis
│   │   ├── network-bandwidth-analyzer.sh # Network analysis
│   │   ├── php-optimizer.sh            # PHP Configuration Optimizer (NEW!)
│   │   └── (other performance modules)
│   │
│   └── maintenance/                     # 🧹 System Maintenance
│       └── cleanup-toolkit-data.sh     # Clean temporary toolkit data
│
├── lib/                                 # Shared libraries
│   ├── common-functions.sh             # Reusable functions
│   ├── system-detect.sh                # System type detection
│   ├── user-manager.sh                 # User account management
│   ├── mysql-analyzer.sh               # MySQL utilities
│   ├── reference-db.sh                 # Cross-module intelligence sharing
│   ├── php-detector.sh                 # PHP configuration detection (NEW!)
│   ├── php-analyzer.sh                 # PHP performance analysis engine (NEW!)
│   └── php-config-manager.sh           # PHP config backup/restore/modification (NEW!)
│
├── config/                              # Configuration files
│   ├── settings.conf                   # Main configuration
│   ├── whitelist-ips.txt               # IP whitelist
│   └── whitelist-user-agents.txt       # User-Agent whitelist
│
└── tools/                               # Utility scripts
    ├── diagnostic-report.sh            # Generate system reports
    └── test-*.sh                       # Testing utilities

🚀 Quick Start

Installation & Running

One command - automatic cleanup:

curl -sL https://git.mull.lol/cschantz/Linux-Server-Management-Toolkit/archive/main.tar.gz | tar xz && source linux-server-management-toolkit/run.sh

When exiting (option 0), answer "yes" and cleanup happens automatically - no extra steps.

Or if already downloaded:

source /root/linux-server-management-toolkit/run.sh

✨ Key Features

🛡️ Security & Monitoring

• Bot & Traffic Analyzer: Full bot/threat analysis with pattern detection
• Live Attack Monitor: Real-time SOC dashboard with threat classification
• Specialized Monitors: SSH attacks, web traffic, firewall activity
• IP Reputation Manager: Centralized cross-module IP intelligence with query/tracking
• Malware Scanner: ImunifyAV, ClamAV, and Maldet integration
• cPHulk Integration: Auto-imports CSF whitelists from all sources
• Log Viewers: Live tail for Apache access/error, mail, and security logs
• Optimized Status Checks: Uses cached domain status (no redundant HTTP requests)

💾 Backup & Recovery

Acronis Cyber Protect Integration

• Complete Agent Management: Install, update, uninstall, register
• Comprehensive Status Monitoring: Agent health, registration, cloud connectivity
• Manual Backup Triggering: CLI-managed plans with performance optimizations
• Backup Type Selection: Full, Incremental, Differential backups
• Plan Management: View, enable/disable, delete protection plans
• Restore Operations: Full restore capabilities from backups
• Troubleshooting Tools: Log viewing and automated diagnostics

MySQL/MariaDB Database Restore Tool (NEW!)

• Advanced Database Recovery: Restore individual databases from file-based backups (Acronis, raw file backups)
• Multi-Control Panel Support: Automatic path detection for cPanel, InterWorx, Plesk, standalone
• Intelligent Force Recovery: Smart detection for missing tablespace files from other databases
• Safe Selective Restore: Restore single database from full backup without data loss
• Guided Recovery Process: Step-by-step wizard with automatic error detection
• Safety Features: Disk space validation, critical directory protection, recovery level warnings
• Clean SQL Export: Dumps restored database to clean SQL file for import into production

🌐 Website Diagnostics

• Error Analysis: Comprehensive website error detection and troubleshooting
• 500 Error Tracking: Detailed analysis of application errors
• Log Integration: Apache, PHP-FPM, cPanel error log analysis
• Smart Recommendations: Context-aware suggestions for fixing issues

🔍 System Diagnostics & Performance Monitoring

• Comprehensive Health Checks: Hardware, services, security posture
• Loadwatch Health Analyzer: Historical system health analysis from monitoring logs
  • Time-range analysis: 1h, 6h, 24h, 7d, 30d
  • Memory pressure detection and swap usage trending
  • CPU saturation analysis (idle, iowait, steal time)
  • Process issue detection (zombies, high CPU/MEM consumers)
  • MySQL performance monitoring
  • Actionable recommendations based on findings
• PHP Configuration Optimizer (NEW!): Per-domain PHP optimization
  • Analyzes PHP-FPM pool configurations across all domains
  • Detects max_children issues from 7-day error log history
  • OPcache hit rate analysis and tuning recommendations
  • Memory limit optimization based on actual usage
  • Auto-backup before changes with rollback capability
  • Graceful PHP-FPM reload for zero downtime
  • Supports cPanel, InterWorx, Plesk, standalone Apache
• Smart Recommendations: Context-aware suggestions based on findings
• Multi-Panel Support: cPanel, InterWorx, Plesk, standalone Apache

📊 Session Intelligence

• Reference Database: Cross-module data sharing (.sysref)
• No Historical Tracking: Session-based intelligence only
• "Download, Run, Fix, Delete": Designed for one-time troubleshooting

🎯 Usage Examples

Quick System Health Check

bash launcher.sh
# Select: 1) System Health Check

Security Analysis & Monitoring

bash launcher.sh
# Select: 2) Security & Monitoring
# Options:
#   - Bot & Traffic Analyzer (full scan or 1-hour quick scan)
#   - Live Attack Monitor (unified threat intelligence)
#   - SSH/Web/Firewall attack monitors
#   - IP Reputation Manager
#   - Malware Scanner
#   - Enable cPHulk Protection

Website Diagnostics

bash launcher.sh
# Select: 3) Website Diagnostics
# Options:
#   - Website Error Analyzer (comprehensive error detection)
#   - Fast 500 Error Tracker (500 errors only)
#   - WordPress Tools (WP-Cron manager)

Performance Analysis

bash launcher.sh
# Select: 4) Performance Analysis
# Options:
#   - MySQL Query Analyzer (slow query detection)
#   - Network & Bandwidth Analyzer
#   - Hardware Health Check
#   - PHP Configuration Optimizer (per-domain tuning)
#   - Loadwatch Health Analyzer (1h/6h/24h/7d/30d analysis)

Backup & Recovery

bash launcher.sh
# Select: 5) Backup & Recovery
# Options:
#   - Acronis Management (complete backup interface)
#   - MySQL File Restore (convert DB files to SQL)

🔧 Configuration

Edit the configuration file:

nano /root/server-toolkit/config/settings.conf

🔒 Security Considerations

• Run as root: Most modules require root access
• Credentials stored safely: Git credentials in ~/.git-credentials (outside project)
• No sensitive data in repo: .gitignore excludes keys, tokens, credentials
• Test first: Try on non-production environments first

📊 Recent Updates (v2.1)

December 2025 - Major Cleanup & Optimization

Launcher Streamlined (NEW!)

• ✅ Removed 90+ phantom menu items pointing to non-existent scripts
• ✅ Reduced from 1,576 lines to 574 lines (64% reduction)
• ✅ Cleaned up 7-level nested menus to 3 levels maximum
• ✅ Every menu item now points to a real, working script
• ✅ Faster navigation and no more "module not found" errors
• ✅ Main menu: 6 categories, 41 total working options

Performance Optimizations

• ✅ Bot analyzer now uses cached domain status (eliminates redundant HTTP checks)
• ✅ Saves ~5 minutes on 50-domain servers (no more curl requests per check)
• ✅ All modules use centralized reference database for domain status
• ✅ 1-hour cache prevents wasteful re-checking

MySQL/MariaDB Database Restore Tool

• ✅ Advanced database recovery from file-based backups
• ✅ Multi-control panel support (cPanel, InterWorx, Plesk, standalone)
• ✅ Intelligent Force Recovery with smart detection
• ✅ Safe selective restore (single DB from full backup, zero data loss)
• ✅ InterWorx path fix (/chroot/home instead of /home symlink)
• ✅ SQL output saved to restore directory parent (not control panel dirs)
• ✅ Safety features: disk space validation, directory protection, recovery warnings

Documentation Updates

• ✅ Main README updated with streamlined menu structure
• ✅ New modules/backup/README.md (comprehensive backup tools documentation)
• ✅ Updated usage examples to match new launcher
• ✅ All recent features documented

Multi-Control Panel Support

• ✅ Full cPanel support (primary platform - production ready)
• ✅ InterWorx support (validated on real servers - production ready)
• ✅ Plesk support (validated on real servers - production ready)
• ✅ Standalone Apache support (basic functionality)
• ✅ 41 modules refactored for multi-panel architecture
• ✅ All critical paths verified on production systems

Core Features Implemented

Security & Monitoring (14 tools)

• Bot & Traffic Analyzer (full + quick scan)
• Live Attack Monitor + 3 specialized monitors
• IP Reputation Manager
• Malware Scanner
• 4x Log tail viewers
• cPHulk enablement
• CT_LIMIT optimization

Website Diagnostics (3 tools)

• Website Error Analyzer
• Fast 500 Error Tracker
• WordPress Tools (WP-Cron manager)

Performance Analysis (5 tools)

• MySQL Query Analyzer
• Network & Bandwidth Analyzer
• Hardware Health Check
• PHP Configuration Optimizer
• Loadwatch Health Analyzer

Backup & Recovery (11 tools)

• Complete Acronis Cyber Protect integration (9 scripts)
• MySQL/MariaDB database restore
• Cleanup toolkit data

System Infrastructure

• ✅ Reference database for cross-module intelligence (.sysref with 1-hour cache)
• ✅ Automatic control panel detection (system-detect.sh)
• ✅ Multi-panel user/domain management (user-manager.sh)
• ✅ Cached domain status checks (eliminates redundant HTTP requests)
• ✅ Zero hardcoded paths - all detection-based

🙏 Credits

Built for comprehensive cPanel/Linux server management with a focus on security and intelligent automation.

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Version: 2.1.0 Repository: https://git.mull.lol/cschantz/Linux-Server-Management-Toolkit